Hello all, I was given this 73 rt3 and I am struggling putting it back together after   restoring especially with the wire harness. There is a red wire that comes up near the battery and 2 more just aft of it a few inches. I know one is for the battery but I don't see where the other two are connected.
Can anyone assist?

Thanks
 

Female reds go to fuse holder, still available new from Yamaha.

Male red to battery.

cdn.partzilla.com/cdn-cgi/image/width=32...NDE2NzA-ee22e155.jpg
 

 from near Salisbury, UK.

As Mark says. Also, don't connect anything to the single black female wire that exits the harness from the stator wires, about half way up (roughly alongside the carb) - the bike won't run if you do!

Re pictures, you'll need to use a third party host, such as Imgur, and this site only allows this after you've made a dozen or so posts.

And, if you don’t have a schematic, up at the top, there is a tech library. There you should be able to find one for your bike. Do spend time just looking at it, chasing the wires around.

Thank you all, much appreciated
I guess the black wire with female bullet that comes in near battery is for battery ground or flasher?

See post #3 caution about connecting single random harness female bullet black wire to a ground.

Any grounds in that area are bundled with a couple other wires like yellow and blue (taillight harness) or dark green and dark brown (rear flasher lamps harness).  

Battery and flasher grounds likely have their own little pigtail wires made with a bullet connector and a ring terminal that bolts to the frame.  

Got back on the bike today, all lights working but there is a chime coming from flasher when turn signals are on. I replaced oem flasher with after market and now there is an annoying chime. Is this right?

If you bought an aftermarket flasher with an "annoying chime feature" I would expect that.